Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c12_mean_counts_contribs float

liu2026Multiomics_Skin_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Skin_c12_mean_counts_contribs [-0.0652, 0.152]
n
180,452,297
mean
0.000213
sd
0.00323

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1804522975.62% 178988192
chr1 16577019 6.66% 16442250
chr2 15063659 6.22% 14940837
chr3 11988921 6.05% 11889794
chr4 9039357 4.75% 8962207
chr5 10382961 5.72% 10297070
chr6 11274242 6.60% 11181522
chr7 9382950 5.89% 9305695
chr8 8386284 5.78% 8317568
chr9 7852075 5.67% 7788752
chr10 8775075 6.56% 8703927
chr11 9330108 6.91% 9255413
chr12 8974989 6.73% 8902102
chr13 4763138 4.16% 4722879
chr14 5608886 5.24% 5563796
chr15 5736134 5.62% 5690205
chr16 5665676 6.27% 5621525
chr17 7486173 8.99% 7428645
chr18 3895943 4.85% 3863010
chr19 6160248 10.51% 6115200
chr20 4594142 7.13% 4557816
chr21 2078451 4.45% 2061384
chr22 3319288 6.53% 3293700
chrX 4114464 2.64% 4080803
chrY 2114 <0.01% 2092
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 178988192 1 928 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c12__mean_counts_contribs.bw 1.08 GB d9091acb62e4d7057d9829a33b3c1e2d
genomic_resource.yaml 1.31 KB a2f1730e95021fc298b6eb222340be18
statistics/