Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c14_mean_counts_contribs float

liu2026Multiomics_Skin_c14_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Skin_c14_mean_counts_contribs [-0.074, 0.105]
n
124,109,710
mean
0.000196
sd
0.00324

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1241097103.87% 123248413
chr1 11421205 4.59% 11341227
chr2 10365581 4.28% 10294148
chr3 8316122 4.19% 8258589
chr4 6230791 3.28% 6185830
chr5 7324085 4.03% 7273344
chr6 7523856 4.40% 7472385
chr7 6376707 4.00% 6331629
chr8 5808892 4.00% 5768997
chr9 5381279 3.89% 5344026
chr10 6179877 4.62% 6137669
chr11 6207798 4.60% 6165075
chr12 5989106 4.49% 5947403
chr13 3356501 2.93% 3333418
chr14 3837271 3.58% 3810894
chr15 4007242 3.93% 3979053
chr16 3794520 4.20% 3768307
chr17 5201642 6.25% 5165685
chr18 2691248 3.35% 2671690
chr19 4313257 7.36% 4283865
chr20 3292991 5.11% 3270126
chr21 1397191 2.99% 1387770
chr22 2007116 3.95% 1993286
chrX 3085432 1.98% 3063997
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 123248413 1 983 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c14__mean_counts_contribs.bw 765.12 MB 3607f64c8b124f1c65360dbc7cedef8a
genomic_resource.yaml 1.31 KB 91ebd77ea606b516eed0d808afe3f99a
statistics/