Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c17_mean_counts_contribs float

liu2026Multiomics_Skin_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Skin_c17_mean_counts_contribs [-0.0548, 0.177]
n
143,691,493
mean
0.000122
sd
0.00278

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1436914934.48% 142325174
chr1 13756264 5.53% 13625172
chr2 12099375 5.00% 11983510
chr3 9680432 4.88% 9586400
chr4 7298008 3.84% 7225488
chr5 7962139 4.39% 7884457
chr6 8777988 5.14% 8694114
chr7 7327619 4.60% 7257444
chr8 6553351 4.52% 6490522
chr9 6258918 4.52% 6199691
chr10 7119578 5.32% 7052255
chr11 7475120 5.53% 7404570
chr12 6869498 5.15% 6804028
chr13 3693359 3.23% 3657369
chr14 4457863 4.16% 4416124
chr15 4670209 4.58% 4625901
chr16 4373673 4.84% 4333860
chr17 5713611 6.86% 5661052
chr18 3257833 4.05% 3226449
chr19 5181565 8.84% 5136243
chr20 3556364 5.52% 3523414
chr21 1746246 3.74% 1729507
chr22 2527395 4.97% 2504436
chrX 3335085 2.14% 3303168
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 142325174 1 943 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c17__mean_counts_contribs.bw 881.6 MB 0b05d1ed0ea28cfbd211d0aea30a2e3b
genomic_resource.yaml 1.31 KB fa6947fb0cbdc5fd6647d23b29840862
statistics/