Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c18/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c18
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c18
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c18_mean_counts_contribs float

liu2026Multiomics_Skin_c18_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Skin_c18_mean_counts_contribs [-0.0264, 0.0823]
n
117,786,380
mean
4.45e-05
sd
0.00234

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1177863803.67% 116463235
chr1 11108422 4.46% 10983986
chr2 9727638 4.02% 9616439
chr3 7711347 3.89% 7623055
chr4 5888696 3.10% 5819615
chr5 6586215 3.63% 6510409
chr6 7295132 4.27% 7212019
chr7 6245011 3.92% 6173930
chr8 5275122 3.63% 5214943
chr9 4890470 3.53% 4836253
chr10 5793023 4.33% 5728146
chr11 5910304 4.38% 5844935
chr12 5889659 4.42% 5823285
chr13 2976768 2.60% 2942083
chr14 3636390 3.40% 3595917
chr15 3699519 3.63% 3658535
chr16 3824018 4.23% 3783074
chr17 4817988 5.79% 4766169
chr18 2543427 3.16% 2514441
chr19 4464531 7.62% 4420325
chr20 3165171 4.91% 3130436
chr21 1311384 2.81% 1296639
chr22 2001565 3.94% 1980305
chrX 3018238 1.93% 2984103
chrY 6342 0.01% 4193
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116463235 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c18__mean_counts_contribs.bw 722.35 MB 06fe0b28bcafb7aa05524e0b04779e00
genomic_resource.yaml 1.31 KB d875f1a2806d8e5278f4f38c6baf4dd5
statistics/