Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c3_mean_counts_contribs float

liu2026Multiomics_Skin_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Skin_c3_mean_counts_contribs [-0.172, 0.22]
n
253,923,245
mean
0.000485
sd
0.00468

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2539232457.91% 252377266
chr1 22629277 9.09% 22491902
chr2 21678892 8.95% 21546852
chr3 17119728 8.63% 17015032
chr4 13100083 6.89% 13016278
chr5 15443572 8.51% 15348695
chr6 15730350 9.21% 15634343
chr7 13250117 8.32% 13168210
chr8 12221361 8.42% 12146116
chr9 11180120 8.08% 11112162
chr10 13214682 9.88% 13135491
chr11 12576770 9.31% 12501565
chr12 12096143 9.08% 12022273
chr13 7250502 6.34% 7205339
chr14 8049349 7.52% 8000533
chr15 8086693 7.93% 8037547
chr16 7525710 8.33% 7480550
chr17 9622066 11.56% 9565701
chr18 5865306 7.30% 5828815
chr19 6998973 11.94% 6959071
chr20 6732241 10.45% 6692219
chr21 3105604 6.65% 3086448
chr22 3993546 7.86% 3969792
chrX 6450046 4.13% 6410232
chrY 2114 <0.01% 2100
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 252377266 1 988 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c3__mean_counts_contribs.bw 1.53 GB f78b7adbe774b4d9cd853f632c840473
genomic_resource.yaml 1.3 KB f6922c785594d0dc50f5537c3e2889db
statistics/