Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Skin/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Skin for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Skin_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Skin
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Skin_c4_mean_counts_contribs float

liu2026Multiomics_Skin_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Skin_c4_mean_counts_contribs [-0.084, 0.194]
n
268,117,521
mean
0.000368
sd
0.00407

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2681175218.35% 266228277
chr1 24373169 9.79% 24201027
chr2 22619245 9.34% 22458656
chr3 17989195 9.07% 17861344
chr4 13988071 7.35% 13884112
chr5 15973175 8.80% 15859859
chr6 16561164 9.70% 16444793
chr7 13973663 8.77% 13874907
chr8 12775631 8.80% 12685002
chr9 11621888 8.40% 11540168
chr10 13487255 10.08% 13392933
chr11 13418069 9.93% 13325105
chr12 13048527 9.79% 12956952
chr13 7514594 6.57% 7460583
chr14 8208171 7.67% 8150608
chr15 8520172 8.35% 8460168
chr16 8022480 8.88% 7967501
chr17 10576431 12.70% 10503814
chr18 6301588 7.84% 6256117
chr19 7711825 13.16% 7661368
chr20 7116935 11.04% 7067608
chr21 3186190 6.82% 3163269
chr22 4454792 8.77% 4424634
chrX 6673177 4.28% 6625655
chrY 2114 <0.01% 2094
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 266228277 1 984 1.01 1
global segment-length histogram

Files

Filename Size md5
Skin_c4__mean_counts_contribs.bw 1.61 GB fba7af872cfab37a6ebc4f0caa738dae
genomic_resource.yaml 1.3 KB e1065785a4fbbd843dbed5d20dba9748
statistics/