Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c0/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c0
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c0_mean_counts_contribs float

liu2026Multiomics_Spleen_c0_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c0_mean_counts_contribs [-0.101, 0.239]
n
267,865,238
mean
0.00036
sd
0.00404

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2678652388.35% 266500525
chr1 24158222 9.70% 24036144
chr2 22971518 9.48% 22854888
chr3 18472937 9.32% 18377833
chr4 14490111 7.62% 14413353
chr5 14978885 8.25% 14902624
chr6 16638037 9.74% 16554230
chr7 13603340 8.54% 13534489
chr8 12546817 8.64% 12482852
chr9 11322939 8.18% 11264465
chr10 13759054 10.28% 13688215
chr11 13747316 10.18% 13679091
chr12 13168700 9.88% 13102039
chr13 7673404 6.71% 7634226
chr14 8450607 7.89% 8407692
chr15 8581984 8.41% 8538535
chr16 7744946 8.57% 7706160
chr17 10610806 12.74% 10558218
chr18 6098722 7.59% 6065804
chr19 7830213 13.36% 7792467
chr20 6732633 10.45% 6699157
chr21 3005846 6.44% 2989959
chr22 4604258 9.06% 4581691
chrX 6570928 4.21% 6536412
chrY 103015 0.18% 99981
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 266500525 1 2545 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c0__mean_counts_contribs.bw 1.61 GB 896e8711b7e50f368e06ef2d94ffbc1f
genomic_resource.yaml 1.31 KB be09df53474c85b7d3aa4567046707c0
statistics/