Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c0/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c0
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c0_mean_pred_corrected float

liu2026Multiomics_Spleen_c0_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c0_mean_pred_corrected [0.00435, 74.2]
n
148,501,412
mean
0.523
sd
1.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1485014124.63% 148499870
chr1 13452221 5.40% 13452207
chr2 12720374 5.25% 12720356
chr3 10172068 5.13% 10172055
chr4 7969568 4.19% 7969557
chr5 8268087 4.55% 8268078
chr6 9228736 5.40% 9228725
chr7 7507912 4.71% 7507908
chr8 6921849 4.77% 6921842
chr9 6287338 4.54% 6287334
chr10 7634432 5.71% 7634429
chr11 7654544 5.67% 7654538
chr12 7306598 5.48% 7306586
chr13 4238621 3.71% 4238614
chr14 4685019 4.38% 4685015
chr15 4772013 4.68% 4772004
chr16 4300922 4.76% 4300916
chr17 5976253 7.18% 5976247
chr18 3353012 4.17% 3353008
chr19 4439836 7.57% 4439831
chr20 3730589 5.79% 3730582
chr21 1659274 3.55% 1659272
chr22 2557315 5.03% 2557314
chrX 3605149 2.31% 3605145
chrY 59682 0.10% 58307
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 148499870 1 1341 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c0__mean_pred_corrected.bw 1.1 GB 3563cdf76692b9fcdf35638e4ba7de7b
genomic_resource.yaml 1.28 KB 4cd42098d33686289ae75b0ea61f4a8f
statistics/