Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c10/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c10
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c10_mean_counts_contribs float

liu2026Multiomics_Spleen_c10_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c10_mean_counts_contribs [-0.0467, 0.331]
n
146,513,233
mean
0.00017
sd
0.0035

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1465132334.57% 145338169
chr1 14108040 5.67% 13996104
chr2 11780480 4.86% 11683545
chr3 9545463 4.81% 9465758
chr4 6571663 3.45% 6513613
chr5 7555896 4.16% 7493855
chr6 8772479 5.14% 8700749
chr7 7426669 4.66% 7366457
chr8 6308572 4.35% 6256920
chr9 6205205 4.48% 6156086
chr10 7031729 5.26% 6974881
chr11 7743227 5.73% 7682689
chr12 7344967 5.51% 7286047
chr13 3410925 2.98% 3382246
chr14 4817694 4.50% 4779821
chr15 4660102 4.57% 4622740
chr16 5001593 5.54% 4964660
chr17 6930284 8.32% 6877577
chr18 2977771 3.70% 2951239
chr19 6110894 10.43% 6068534
chr20 3856250 5.98% 3826668
chr21 1666558 3.57% 1652866
chr22 3130784 6.16% 3107806
chrX 3472045 2.23% 3443997
chrY 83943 0.15% 83311
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145338169 1 946 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c10__mean_counts_contribs.bw 899.59 MB 899b87ab83d8ed15b83c8bcdcab8beb0
genomic_resource.yaml 1.32 KB 077e6752c8b38390b2c2a362b775fc06
statistics/