Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c10/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c10
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c10_mean_pred_corrected float

liu2026Multiomics_Spleen_c10_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c10_mean_pred_corrected [0.00243, 20.1]
n
76,740,401
mean
0.137
sd
0.306

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 767404012.39% 76740380
chr1 7409164 2.98% 7409162
chr2 6126338 2.53% 6126337
chr3 4959374 2.50% 4959374
chr4 3417653 1.80% 3417653
chr5 3940918 2.17% 3940916
chr6 4597335 2.69% 4597334
chr7 3868367 2.43% 3868366
chr8 3281458 2.26% 3281458
chr9 3251334 2.35% 3251333
chr10 3675212 2.75% 3675209
chr11 4078902 3.02% 4078901
chr12 3852200 2.89% 3852200
chr13 1769947 1.55% 1769947
chr14 2528767 2.36% 2528765
chr15 2436958 2.39% 2436958
chr16 2629201 2.91% 2629200
chr17 3683321 4.42% 3683318
chr18 1540239 1.92% 1540238
chr19 3296485 5.62% 3296485
chr20 2013420 3.12% 2013418
chr21 871622 1.87% 871622
chr22 1635529 3.22% 1635529
chrX 1830418 1.17% 1830418
chrY 46239 0.08% 46239
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76740380 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c10__mean_pred_corrected.bw 582.19 MB ae1aad0e48a94aeef72f45ebf0001b92
genomic_resource.yaml 1.28 KB e21d5ee7da97c84833e1e962bff0b313
statistics/