Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c11_mean_counts_contribs float

liu2026Multiomics_Spleen_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c11_mean_counts_contribs [-0.0534, 0.0881]
n
112,680,515
mean
0.000106
sd
0.00299

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1126805153.51% 111748263
chr1 10919133 4.39% 10828477
chr2 9182490 3.79% 9106367
chr3 7306121 3.68% 7244374
chr4 5407248 2.84% 5361675
chr5 6044852 3.33% 5994637
chr6 6664293 3.90% 6609238
chr7 5429915 3.41% 5384965
chr8 5019635 3.46% 4977580
chr9 4763831 3.44% 4724576
chr10 5506992 4.12% 5461404
chr11 6081176 4.50% 6031565
chr12 5693906 4.27% 5647152
chr13 2717880 2.38% 2695116
chr14 3514551 3.28% 3485879
chr15 3796646 3.72% 3764500
chr16 3631784 4.02% 3602552
chr17 5178151 6.22% 5136457
chr18 2267127 2.82% 2246235
chr19 4640137 7.92% 4603980
chr20 2968054 4.61% 2943862
chr21 1230179 2.63% 1219971
chr22 2140134 4.21% 2122779
chrX 2530072 1.62% 2509081
chrY 46208 0.08% 45841
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111748263 1 958 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c11__mean_counts_contribs.bw 693.32 MB d25fccf0f0d26c67fe3217ea5ad4f252
genomic_resource.yaml 1.32 KB dd969e0538341174cba3270252b8022c
statistics/