Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c11/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c11
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c11_mean_pred_corrected float

liu2026Multiomics_Spleen_c11_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c11_mean_pred_corrected [0.000548, 5.41]
n
58,364,466
mean
0.0675
sd
0.111

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 583644661.82% 58364449
chr1 5674504 2.28% 5674503
chr2 4740027 1.96% 4740027
chr3 3775428 1.90% 3775426
chr4 2788718 1.47% 2788716
chr5 3119088 1.72% 3119087
chr6 3470236 2.03% 3470233
chr7 2805721 1.76% 2805720
chr8 2581427 1.78% 2581427
chr9 2454658 1.77% 2454658
chr10 2851890 2.13% 2851888
chr11 3152149 2.33% 3152148
chr12 2955286 2.22% 2955285
chr13 1396469 1.22% 1396469
chr14 1829567 1.71% 1829567
chr15 1954865 1.92% 1954863
chr16 1887305 2.09% 1887305
chr17 2706469 3.25% 2706469
chr18 1160984 1.44% 1160984
chr19 2457102 4.19% 2457101
chr20 1530865 2.38% 1530865
chr21 634083 1.36% 634083
chr22 1098055 2.16% 1098055
chrX 1313822 0.84% 1313822
chrY 25748 0.04% 25748
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58364449 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c11__mean_pred_corrected.bw 442.6 MB d3cb2695185a2e123c52b2572b3a47a5
genomic_resource.yaml 1.28 KB 36fc3e932b0a5d772411a66d3dc1111a
statistics/