Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c2/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c2
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c2_mean_counts_contribs float

liu2026Multiomics_Spleen_c2_mean_counts_contribs
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
 HISTOGRAM FOR liu2026Multiomics_Spleen_c2_mean_counts_contribs [-0.0896, 0.3]
n
218,749,063
mean
0.000487
sd
0.00563

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2187490636.82% 217521486
chr1 20444594 8.21% 20330318
chr2 17856121 7.37% 17755271
chr3 14369669 7.25% 14287483
chr4 10415840 5.48% 10353209
chr5 12053735 6.64% 11985607
chr6 12733720 7.46% 12662326
chr7 11309581 7.10% 11245872
chr8 9900780 6.82% 9844700
chr9 9263811 6.69% 9211516
chr10 10804213 8.08% 10743051
chr11 10960884 8.11% 10901304
chr12 10670340 8.01% 10611017
chr13 5898787 5.16% 5864901
chr14 7076361 6.61% 7037695
chr15 7304965 7.16% 7264480
chr16 7323273 8.11% 7283977
chr17 9566078 11.49% 9514635
chr18 5191610 6.46% 5159770
chr19 7393632 12.61% 7355835
chr20 6010167 9.33% 5977496
chr21 2396944 5.13% 2383529
chr22 4347815 8.56% 4325319
chrX 5295383 3.39% 5264382
chrY 160760 0.28% 157793
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 217521486 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c2__mean_counts_contribs.bw 1.32 GB 4c31b1f7efa757d0123ca8225ce0b9e5
genomic_resource.yaml 1.31 KB c0114776cfba407a827a6b6a68e086f5
statistics/