Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c2/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c2
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c2_mean_pred_corrected float

liu2026Multiomics_Spleen_c2_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c2_mean_pred_corrected [0.00207, 32.9]
n
118,592,262
mean
0.281
sd
0.536

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1185922623.70% 118591191
chr1 11118605 4.47% 11118592
chr2 9619670 3.97% 9619664
chr3 7752138 3.91% 7752131
chr4 5591544 2.94% 5591540
chr5 6511263 3.59% 6511258
chr6 6919819 4.05% 6919811
chr7 6112208 3.84% 6112207
chr8 5330582 3.67% 5330577
chr9 5011285 3.62% 5011280
chr10 5835207 4.36% 5835200
chr11 5975869 4.42% 5975865
chr12 5797823 4.35% 5797815
chr13 3185327 2.79% 3185323
chr14 3848751 3.60% 3848748
chr15 3970017 3.89% 3970012
chr16 3987444 4.41% 3987440
chr17 5273017 6.33% 5273014
chr18 2777425 3.46% 2777420
chr19 4110278 7.01% 4110274
chr20 3247135 5.04% 3247130
chr21 1299987 2.78% 1299987
chr22 2365404 4.65% 2365402
chrX 2862578 1.83% 2862576
chrY 88886 0.16% 87925
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 118591191 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c2__mean_pred_corrected.bw 898.57 MB 8b85a37eec207fa41685f7ecc57ba99f
genomic_resource.yaml 1.28 KB eca8508906776ff7e341ba1e05264941
statistics/