Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c3/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c3
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c3_mean_counts_contribs float

liu2026Multiomics_Spleen_c3_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c3_mean_counts_contribs [-0.0766, 0.233]
n
169,557,115
mean
0.000346
sd
0.00448

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1695571155.28% 168670479
chr1 16073753 6.46% 15989934
chr2 13714838 5.66% 13642688
chr3 11024843 5.56% 10964989
chr4 7486472 3.94% 7443171
chr5 8498275 4.68% 8453407
chr6 10624071 6.22% 10568542
chr7 8484818 5.32% 8440976
chr8 7394632 5.09% 7356254
chr9 7092136 5.12% 7054265
chr10 8171871 6.11% 8129590
chr11 8419224 6.23% 8376989
chr12 8709368 6.53% 8663332
chr13 3979995 3.48% 3958621
chr14 5735167 5.36% 5704649
chr15 5517378 5.41% 5488919
chr16 5801282 6.42% 5773585
chr17 8076574 9.70% 8036949
chr18 3486578 4.34% 3466166
chr19 6903476 11.78% 6871823
chr20 4519219 7.01% 4496581
chr21 1989644 4.26% 1978056
chr22 3756361 7.39% 3737861
chrX 3987207 2.56% 3965873
chrY 109933 0.19% 107259
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 168670479 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c3__mean_counts_contribs.bw 1.02 GB ab1616a841027841352ce7596126a05c
genomic_resource.yaml 1.31 KB bb14a747f3c4512228eb37a9c91139be
statistics/