Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c3_mean_pred_corrected float

liu2026Multiomics_Spleen_c3_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c3_mean_pred_corrected [0.00451, 37.6]
n
92,224,337
mean
0.301
sd
0.629

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 922243372.87% 92223338
chr1 8780555 3.53% 8780549
chr2 7454150 3.08% 7454145
chr3 5923881 2.99% 5923878
chr4 4035067 2.12% 4035063
chr5 4601262 2.53% 4601261
chr6 5780113 3.38% 5780111
chr7 4593112 2.88% 4593111
chr8 4018133 2.77% 4018131
chr9 3843118 2.78% 3843118
chr10 4445810 3.32% 4445808
chr11 4600847 3.41% 4600847
chr12 4737013 3.55% 4737010
chr13 2142505 1.87% 2142504
chr14 3100421 2.90% 3100421
chr15 2991536 2.93% 2991536
chr16 3181451 3.52% 3181450
chr17 4452700 5.35% 4452694
chr18 1883309 2.34% 1883308
chr19 3854006 6.57% 3854003
chr20 2454205 3.81% 2454201
chr21 1076902 2.31% 1076902
chr22 2041038 4.02% 2041038
chrX 2172951 1.39% 2172948
chrY 60252 0.11% 59301
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92223338 1 910 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c3__mean_pred_corrected.bw 697.84 MB caec49313a1229aeaeb1a7e7678e6693
genomic_resource.yaml 1.28 KB bb2c434c5a6b711df726cf9d5ad873e5
statistics/