Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c4_mean_counts_contribs float

liu2026Multiomics_Spleen_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c4_mean_counts_contribs [-0.0779, 0.17]
n
176,167,248
mean
0.0003
sd
0.00387

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1761672485.49% 174989211
chr1 16632462 6.68% 16521367
chr2 14525484 6.00% 14428104
chr3 11664086 5.88% 11584384
chr4 8529355 4.48% 8469109
chr5 9390108 5.17% 9327063
chr6 10553083 6.18% 10482613
chr7 8676416 5.45% 8618794
chr8 7891743 5.44% 7838615
chr9 7541422 5.45% 7491700
chr10 8890765 6.64% 8830589
chr11 9214379 6.82% 9153547
chr12 8819769 6.62% 8761014
chr13 4533389 3.96% 4502378
chr14 5692257 5.32% 5654587
chr15 5835585 5.72% 5796750
chr16 5616657 6.22% 5580600
chr17 7783974 9.35% 7733729
chr18 3764571 4.68% 3737647
chr19 6451802 11.01% 6411943
chr20 4674298 7.25% 4644022
chr21 1973309 4.22% 1959776
chr22 3394309 6.68% 3372959
chrX 4031441 2.58% 4003980
chrY 86584 0.15% 83941
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 174989211 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c4__mean_counts_contribs.bw 1.06 GB d2f06ffec218e96a9bff6213c1402409
genomic_resource.yaml 1.31 KB 36786b2fcb336548b7268859a5210c7a
statistics/