Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c4/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c4
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c4_mean_pred_corrected float

liu2026Multiomics_Spleen_c4_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c4_mean_pred_corrected [0.00185, 30.2]
n
94,025,406
mean
0.242
sd
0.532

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 940254062.93% 94024428
chr1 8906405 3.58% 8906401
chr2 7736984 3.19% 7736984
chr3 6172905 3.11% 6172900
chr4 4518774 2.38% 4518773
chr5 4969354 2.74% 4969352
chr6 5638467 3.30% 5638466
chr7 4624708 2.90% 4624706
chr8 4181775 2.88% 4181774
chr9 4027805 2.91% 4027802
chr10 4743163 3.55% 4743161
chr11 4923163 3.64% 4923161
chr12 4705101 3.53% 4705100
chr13 2394708 2.09% 2394708
chr14 3031570 2.83% 3031568
chr15 3120604 3.06% 3120601
chr16 3020357 3.34% 3020355
chr17 4206715 5.05% 4206712
chr18 1989794 2.48% 1989793
chr19 3556434 6.07% 3556431
chr20 2483816 3.85% 2483815
chr21 1043697 2.23% 1043696
chr22 1819895 3.58% 1819895
chrX 2159572 1.38% 2159572
chrY 49640 0.09% 48702
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94024428 1 910 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c4__mean_pred_corrected.bw 711.83 MB 82ccbe6848e40df92aa9a60ff412df85
genomic_resource.yaml 1.28 KB 19102957050d0757883fbd40673b72e2
statistics/