Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c5/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c5
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c5_mean_counts_contribs float

liu2026Multiomics_Spleen_c5_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c5_mean_counts_contribs [-0.0771, 0.24]
n
195,115,307
mean
0.000387
sd
0.00453

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1951153076.08% 193886492
chr1 18588591 7.47% 18472012
chr2 16008713 6.61% 15907097
chr3 12863504 6.49% 12780180
chr4 8820326 4.64% 8760339
chr5 10376734 5.72% 10310283
chr6 11975580 7.01% 11900008
chr7 9816526 6.16% 9754396
chr8 8571408 5.91% 8517062
chr9 8172384 5.91% 8120513
chr10 9704878 7.25% 9643397
chr11 9918983 7.34% 9858097
chr12 9825460 7.37% 9764219
chr13 4618272 4.04% 4588428
chr14 6334338 5.92% 6294525
chr15 6505765 6.38% 6464867
chr16 6307307 6.98% 6270391
chr17 9257212 11.12% 9202326
chr18 4056536 5.05% 4028877
chr19 7476309 12.75% 7435212
chr20 5182716 8.04% 5151129
chr21 2366467 5.07% 2349509
chr22 3803836 7.49% 3781667
chrX 4485558 2.87% 4457052
chrY 77904 0.14% 74906
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 193886492 1 2544 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c5__mean_counts_contribs.bw 1.17 GB 216c9396475740e59f6efc88d5c748e6
genomic_resource.yaml 1.31 KB 3c4b947cf793644beab4108d259e3f2d
statistics/