Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c5/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c5
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c5
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c5_mean_pred_corrected float

liu2026Multiomics_Spleen_c5_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c5_mean_pred_corrected [0.00297, 27]
n
104,036,629
mean
0.218
sd
0.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1040366293.24% 104035191
chr1 9934329 3.99% 9934327
chr2 8478939 3.50% 8478931
chr3 6798232 3.43% 6798225
chr4 4657946 2.45% 4657944
chr5 5492550 3.03% 5492550
chr6 6395153 3.74% 6395152
chr7 5202195 3.26% 5202192
chr8 4539049 3.13% 4539048
chr9 4354143 3.15% 4354139
chr10 5183244 3.87% 5183238
chr11 5309216 3.93% 5309215
chr12 5243286 3.93% 5243283
chr13 2448667 2.14% 2448666
chr14 3375241 3.15% 3375238
chr15 3449163 3.38% 3449161
chr16 3385275 3.75% 3385272
chr17 5032096 6.04% 5032093
chr18 2149283 2.67% 2149283
chr19 4114878 7.02% 4114874
chr20 2762406 4.29% 2762406
chr21 1259303 2.70% 1259303
chr22 2042133 4.02% 2042133
chrX 2386532 1.53% 2386531
chrY 43370 0.08% 41987
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104035191 1 1341 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c5__mean_pred_corrected.bw 787.12 MB 33feaaa94fc1b87eaa9583d26623760e
genomic_resource.yaml 1.28 KB e01266d299b36247c435f7b8835fbbbf
statistics/