Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c6/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c6
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c6
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c6_mean_counts_contribs float

liu2026Multiomics_Spleen_c6_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c6_mean_counts_contribs [-0.0688, 0.185]
n
180,177,476
mean
0.000288
sd
0.0039

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1801774765.61% 178934227
chr1 16894461 6.79% 16779202
chr2 14927755 6.16% 14824059
chr3 11862195 5.98% 11778331
chr4 8643080 4.54% 8578855
chr5 9766465 5.38% 9698475
chr6 10720617 6.28% 10646334
chr7 9177353 5.76% 9113453
chr8 8217987 5.66% 8160425
chr9 7667402 5.54% 7614345
chr10 8998275 6.73% 8936346
chr11 9145594 6.77% 9084364
chr12 8942359 6.71% 8881231
chr13 4700193 4.11% 4667033
chr14 5867466 5.48% 5827767
chr15 5958353 5.84% 5917323
chr16 5941982 6.58% 5903275
chr17 7894872 9.48% 7843015
chr18 4084626 5.08% 4053875
chr19 6443961 10.99% 6403887
chr20 4758198 7.38% 4726204
chr21 2016739 4.32% 2002291
chr22 3380433 6.65% 3358319
chrX 4072697 2.61% 4044166
chrY 94413 0.16% 91652
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 178934227 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c6__mean_counts_contribs.bw 1.08 GB 1f1176163abcdb9ff9078674118b2de7
genomic_resource.yaml 1.31 KB 218b9490da34249fcf45a9e06e9eb99a
statistics/