Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c7/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c7
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c7_mean_counts_contribs float

liu2026Multiomics_Spleen_c7_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c7_mean_counts_contribs [-0.109, 0.196]
n
163,534,733
mean
0.000352
sd
0.00424

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1635347335.10% 162566690
chr1 15306519 6.15% 15215740
chr2 13402912 5.53% 13324334
chr3 10726909 5.41% 10662622
chr4 8179533 4.30% 8129106
chr5 8758032 4.82% 8706431
chr6 9835387 5.76% 9777698
chr7 8139320 5.11% 8091589
chr8 7331692 5.05% 7288517
chr9 6908807 4.99% 6868276
chr10 8476445 6.34% 8424649
chr11 8659381 6.41% 8609508
chr12 8084680 6.07% 8037420
chr13 4190297 3.66% 4165299
chr14 5131104 4.79% 5101271
chr15 5411102 5.31% 5379086
chr16 5212434 5.77% 5181945
chr17 7197415 8.64% 7155292
chr18 3511476 4.37% 3488842
chr19 5922557 10.10% 5888933
chr20 4317569 6.70% 4292590
chr21 1811057 3.88% 1800462
chr22 3053564 6.01% 3036023
chrX 3902051 2.50% 3879011
chrY 64490 0.11% 62046
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162566690 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c7__mean_counts_contribs.bw 1007.88 MB aa6d8cd03a6b76e8e3bb44ef47b5c4a4
genomic_resource.yaml 1.31 KB 7e637310605015b3fed231d34294c6bc
statistics/