Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c7/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c7
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c7
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c7_mean_pred_corrected float

liu2026Multiomics_Spleen_c7_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c7_mean_pred_corrected [0.00234, 21.5]
n
87,301,132
mean
0.212
sd
0.409

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 873011322.72% 87300132
chr1 8195583 3.29% 8195578
chr2 7125556 2.94% 7125553
chr3 5696017 2.87% 5696013
chr4 4324897 2.27% 4324894
chr5 4642008 2.56% 4642007
chr6 5262547 3.08% 5262545
chr7 4322529 2.71% 4322527
chr8 3877860 2.67% 3877857
chr9 3692209 2.67% 3692206
chr10 4519825 3.38% 4519821
chr11 4639377 3.43% 4639375
chr12 4325354 3.25% 4325352
chr13 2212298 1.93% 2212297
chr14 2737294 2.56% 2737293
chr15 2889913 2.83% 2889911
chr16 2795311 3.09% 2795308
chr17 3892204 4.67% 3892203
chr18 1861228 2.32% 1861227
chr19 3260377 5.56% 3260374
chr20 2307058 3.58% 2307057
chr21 960175 2.06% 960174
chr22 1636026 3.22% 1636026
chrX 2087732 1.34% 2087731
chrY 37754 0.07% 36803
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87300132 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c7__mean_pred_corrected.bw 661.49 MB 486df866b8961904f8c577f6e2d7938c
genomic_resource.yaml 1.28 KB aeaf6c7892b3517c67079af5fb5272b8
statistics/