Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c8/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c8
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c8
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c8_mean_counts_contribs float

liu2026Multiomics_Spleen_c8_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c8_mean_counts_contribs [-0.0585, 0.138]
n
134,254,886
mean
0.000153
sd
0.00337

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1342548864.18% 133211402
chr1 13248580 5.32% 13145703
chr2 10391631 4.29% 10308719
chr3 8762731 4.42% 8691092
chr4 5731925 3.01% 5681872
chr5 6574195 3.62% 6521524
chr6 7977015 4.67% 7913027
chr7 6772370 4.25% 6719698
chr8 5706814 3.93% 5661875
chr9 5523300 3.99% 5481083
chr10 6581575 4.92% 6529455
chr11 7064849 5.23% 7012095
chr12 6736122 5.05% 6683200
chr13 3077186 2.69% 3052156
chr14 4472283 4.18% 4437316
chr15 4373982 4.29% 4339902
chr16 4675230 5.18% 4642490
chr17 6637450 7.97% 6590239
chr18 2618974 3.26% 2595873
chr19 6074939 10.36% 6035179
chr20 3751277 5.82% 3723731
chr21 1402607 3.00% 1391907
chr22 2929554 5.76% 2909101
chrX 3121167 2.00% 3097466
chrY 49130 0.09% 46699
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133211402 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c8__mean_counts_contribs.bw 824.38 MB cda0260ebb3f852cc8f4c87ca126fa46
genomic_resource.yaml 1.31 KB 27a747e15f97a4953e7b836dc8c77288
statistics/