Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c9/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Spleen for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c9
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c9_mean_counts_contribs float

liu2026Multiomics_Spleen_c9_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Spleen_c9_mean_counts_contribs [-0.0563, 0.177]
n
121,413,711
mean
0.000211
sd
0.00375

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1214137113.78% 120570673
chr1 11837595 4.75% 11755066
chr2 9790879 4.04% 9722210
chr3 7726236 3.90% 7669966
chr4 5118217 2.69% 5078974
chr5 6008709 3.31% 5966227
chr6 7488971 4.38% 7436558
chr7 6008694 3.77% 5966874
chr8 5161457 3.56% 5125223
chr9 4973625 3.59% 4939313
chr10 5968312 4.46% 5926540
chr11 6039456 4.47% 5998861
chr12 6272432 4.71% 6228762
chr13 2939500 2.57% 2918597
chr14 4017134 3.75% 3989496
chr15 4050672 3.97% 4023214
chr16 4152282 4.60% 4125823
chr17 6058361 7.28% 6017937
chr18 2198616 2.74% 2181226
chr19 5445578 9.29% 5411203
chr20 3254928 5.05% 3233096
chr21 1440172 3.08% 1430187
chr22 2535561 4.99% 2519337
chrX 2845760 1.82% 2825950
chrY 80564 0.14% 80033
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 120570673 1 976 1.01 1
global segment-length histogram

Files

Filename Size md5
Spleen_c9__mean_counts_contribs.bw 746.48 MB 14319b26916d01231ca11a76a1043ea5
genomic_resource.yaml 1.31 KB 0a86f0ea7f542ac4a6384a89e8ccf07e
statistics/