Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Spleen/c9/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Spleen for cell cluster c9
Description
Labels
  • assay: SHARE-seq
  • cluster: Spleen_c9
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Spleen
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Spleen_c9_mean_pred_corrected float

liu2026Multiomics_Spleen_c9_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Spleen_c9_mean_pred_corrected [0.00157, 8.84]
n
63,774,959
mean
0.107
sd
0.185

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 637749591.99% 63774939
chr1 6261356 2.52% 6261352
chr2 5125118 2.12% 5125116
chr3 4023763 2.03% 4023763
chr4 2657929 1.40% 2657927
chr5 3142680 1.73% 3142680
chr6 3936166 2.30% 3936165
chr7 3137050 1.97% 3137050
chr8 2693919 1.86% 2693919
chr9 2599198 1.88% 2599196
chr10 3127601 2.34% 3127601
chr11 3185809 2.36% 3185808
chr12 3296039 2.47% 3296037
chr13 1534847 1.34% 1534845
chr14 2115153 1.98% 2115153
chr15 2118400 2.08% 2118400
chr16 2196420 2.43% 2196419
chr17 3213499 3.86% 3213499
chr18 1147857 1.43% 1147856
chr19 2927856 4.99% 2927855
chr20 1699327 2.64% 1699327
chr21 751555 1.61% 751554
chr22 1328979 2.62% 1328979
chrX 1509580 0.97% 1509580
chrY 44858 0.08% 44858
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63774939 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Spleen_c9__mean_pred_corrected.bw 483.65 MB 5a59a291e310bb2f60625f2619a37e32
genomic_resource.yaml 1.28 KB 33987bc37eebd091b3464b41f2f69c7f
statistics/