Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c0/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c0
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c0
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c0_mean_pred_corrected float

liu2026Multiomics_Stomach_c0_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c0_mean_pred_corrected [0.000228, 74.8]
n
109,579,389
mean
0.484
sd
1.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1095793893.41% 109578374
chr1 10521311 4.23% 10521299
chr2 8728671 3.60% 8728665
chr3 6996799 3.53% 6996795
chr4 5181937 2.72% 5181936
chr5 5647073 3.11% 5647065
chr6 6554983 3.84% 6554980
chr7 5628952 3.53% 5628949
chr8 4667709 3.22% 4667705
chr9 4733367 3.42% 4733365
chr10 5137018 3.84% 5137011
chr11 5802394 4.30% 5802389
chr12 5238850 3.93% 5238846
chr13 2786415 2.44% 2786415
chr14 3540332 3.31% 3540331
chr15 3572216 3.50% 3572212
chr16 3769027 4.17% 3769025
chr17 5112964 6.14% 5112962
chr18 2270869 2.83% 2270868
chr19 4320385 7.37% 4320383
chr20 2921811 4.53% 2921807
chr21 1302985 2.79% 1302985
chr22 2262957 4.45% 2262956
chrX 2832384 1.82% 2832381
chrY 47980 0.08% 47044
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109578374 1 910 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c0__mean_pred_corrected.bw 829.24 MB 1dca646b79f371e0a179a39c3eee5d30
genomic_resource.yaml 1.28 KB 2707b063dd04e8259195be181e9f82c9
statistics/