Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c1/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c1
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c1
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c1_mean_pred_corrected float

liu2026Multiomics_Stomach_c1_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c1_mean_pred_corrected [0.000142, 148]
n
145,215,357
mean
0.682
sd
1.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1452153574.52% 145213799
chr1 13778818 5.53% 13778803
chr2 11923160 4.92% 11923145
chr3 9393227 4.74% 9393214
chr4 7013908 3.69% 7013894
chr5 7565999 4.17% 7565990
chr6 8744424 5.12% 8744410
chr7 7517156 4.72% 7517151
chr8 6396002 4.41% 6395995
chr9 6371940 4.60% 6371929
chr10 7307458 5.46% 7307456
chr11 7649994 5.66% 7649987
chr12 7094101 5.32% 7094095
chr13 3738024 3.27% 3738021
chr14 4648377 4.34% 4648373
chr15 4828396 4.73% 4828393
chr16 4976571 5.51% 4976568
chr17 6400267 7.69% 6400264
chr18 3041001 3.78% 3040998
chr19 4941193 8.43% 4941191
chr20 3973773 6.17% 3973767
chr21 1812543 3.88% 1812541
chr22 2945821 5.80% 2945819
chrX 3093910 1.98% 3093909
chrY 59294 0.10% 57886
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145213799 1 1330 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c1__mean_pred_corrected.bw 1.07 GB 416764e3fe918ded517c9daf2f4475cb
genomic_resource.yaml 1.28 KB eb20abb662ab16d51979cc87969e244f
statistics/