Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c10/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c10
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c10
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c10_mean_pred_corrected float

liu2026Multiomics_Stomach_c10_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c10_mean_pred_corrected [0.00287, 16.5]
n
73,992,637
mean
0.174
sd
0.328

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 739926372.31% 73991685
chr1 7297885 2.93% 7297883
chr2 5808980 2.40% 5808977
chr3 4587703 2.31% 4587701
chr4 3321096 1.75% 3321094
chr5 3808319 2.10% 3808318
chr6 4311916 2.52% 4311914
chr7 3731877 2.34% 3731877
chr8 3181036 2.19% 3181034
chr9 3181047 2.30% 3181046
chr10 3547492 2.65% 3547491
chr11 4032369 2.99% 4032367
chr12 3664905 2.75% 3664903
chr13 1729914 1.51% 1729914
chr14 2327727 2.17% 2327726
chr15 2427659 2.38% 2427658
chr16 2605123 2.88% 2605123
chr17 3605150 4.33% 3605150
chr18 1454875 1.81% 1454875
chr19 3252836 5.55% 3252834
chr20 2020755 3.14% 2020754
chr21 850239 1.82% 850239
chr22 1548599 3.05% 1548599
chrX 1662575 1.07% 1662573
chrY 32560 0.06% 31635
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73991685 1 364 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c10__mean_pred_corrected.bw 559.59 MB c6350813e5a2efe871e9b7ffdff037ec
genomic_resource.yaml 1.29 KB 69570eeb51eedc8c6b17f4f12a28f3b0
statistics/