Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c11/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c11
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c11_mean_counts_contribs float

liu2026Multiomics_Stomach_c11_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c11_mean_counts_contribs [-0.0658, 0.151]
n
125,772,999
mean
0.000209
sd
0.00361

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1257729993.92% 124950237
chr1 12450467 5.00% 12369341
chr2 9946290 4.11% 9881155
chr3 7769830 3.92% 7718151
chr4 5867449 3.08% 5826080
chr5 6609492 3.64% 6566275
chr6 7274798 4.26% 7227140
chr7 6254629 3.93% 6213874
chr8 5333258 3.67% 5298503
chr9 5594542 4.04% 5558435
chr10 6344432 4.74% 6301970
chr11 6808284 5.04% 6765077
chr12 6199535 4.65% 6159239
chr13 2909157 2.54% 2889904
chr14 4193038 3.92% 4166112
chr15 4174628 4.09% 4147240
chr16 4396351 4.87% 4368953
chr17 5965180 7.16% 5927527
chr18 2434800 3.03% 2416872
chr19 5116586 8.73% 5085474
chr20 3324137 5.16% 3302914
chr21 1346643 2.88% 1337760
chr22 2491828 4.90% 2476380
chrX 2936188 1.88% 2916687
chrY 31457 0.05% 29174
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 124950237 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c11__mean_counts_contribs.bw 774.19 MB ea8a6fbfad9c3df0879f58245670e0bf
genomic_resource.yaml 1.32 KB 178ebc026de21d8d7b3f39f88fe76bb6
statistics/