Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c11/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c11
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c11
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c11_mean_pred_corrected float

liu2026Multiomics_Stomach_c11_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c11_mean_pred_corrected [0.000808, 19.7]
n
66,752,180
mean
0.153
sd
0.287

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 667521802.08% 66751227
chr1 6629585 2.66% 6629582
chr2 5259426 2.17% 5259423
chr3 4101148 2.07% 4101144
chr4 3089561 1.62% 3089559
chr5 3491459 1.92% 3491456
chr6 3866058 2.26% 3866057
chr7 3300298 2.07% 3300298
chr8 2817628 1.94% 2817628
chr9 2962986 2.14% 2962985
chr10 3354612 2.51% 3354611
chr11 3631151 2.69% 3631151
chr12 3292374 2.47% 3292373
chr13 1534972 1.34% 1534971
chr14 2231565 2.08% 2231565
chr15 2212935 2.17% 2212935
chr16 2337417 2.59% 2337416
chr17 3205433 3.85% 3205430
chr18 1277993 1.59% 1277993
chr19 2787317 4.76% 2787317
chr20 1752054 2.72% 1752054
chr21 710605 1.52% 710605
chr22 1313991 2.59% 1313991
chrX 1574060 1.01% 1574060
chrY 17552 0.03% 16623
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66751227 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c11__mean_pred_corrected.bw 505.8 MB e6ea459bd3820b52b50b1372f98b4da5
genomic_resource.yaml 1.29 KB e6aa473ba479cee747e1f59182115e8b
statistics/