Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c12/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c12
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c12_mean_counts_contribs float

liu2026Multiomics_Stomach_c12_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c12_mean_counts_contribs [-0.0347, 0.0984]
n
109,414,333
mean
7.87e-05
sd
0.00286

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1094143333.41% 108465574
chr1 10874746 4.37% 10781019
chr2 8640631 3.57% 8563696
chr3 6880455 3.47% 6818364
chr4 4735345 2.49% 4689888
chr5 5524888 3.04% 5475246
chr6 6327448 3.70% 6271873
chr7 5438101 3.41% 5390596
chr8 4769080 3.29% 4726848
chr9 4680843 3.38% 4641243
chr10 5326326 3.98% 5280004
chr11 6137680 4.54% 6086014
chr12 5499764 4.13% 5451628
chr13 2568800 2.25% 2545398
chr14 3484611 3.26% 3455063
chr15 3626075 3.56% 3594261
chr16 3834517 4.24% 3803445
chr17 5272649 6.33% 5230139
chr18 2044596 2.54% 2025694
chr19 4865045 8.30% 4828170
chr20 2941028 4.56% 2916365
chr21 1244562 2.66% 1233041
chr22 2191227 4.31% 2173501
chrX 2480173 1.59% 2458497
chrY 25743 0.04% 25581
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108465574 1 951 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c12__mean_counts_contribs.bw 671.78 MB b128934d1553b3a6f326c40c80e0ec2a
genomic_resource.yaml 1.32 KB 732d6a97cf967a1a0f85287883a3f871
statistics/