Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c12/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c12
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c12
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c12_mean_pred_corrected float

liu2026Multiomics_Stomach_c12_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c12_mean_pred_corrected [0.00211, 11.2]
n
57,274,765
mean
0.115
sd
0.195

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 572747651.78% 57274750
chr1 5700751 2.29% 5700750
chr2 4491570 1.85% 4491568
chr3 3585299 1.81% 3585299
chr4 2466919 1.30% 2466918
chr5 2871531 1.58% 2871530
chr6 3324792 1.95% 3324791
chr7 2829040 1.78% 2829040
chr8 2476962 1.71% 2476962
chr9 2445021 1.77% 2445020
chr10 2780758 2.08% 2780756
chr11 3234405 2.39% 3234403
chr12 2884072 2.16% 2884072
chr13 1333972 1.17% 1333972
chr14 1828318 1.71% 1828318
chr15 1891740 1.85% 1891740
chr16 2005817 2.22% 2005817
chr17 2794726 3.36% 2794726
chr18 1057254 1.32% 1057254
chr19 2626492 4.48% 2626491
chr20 1532646 2.38% 1532644
chr21 649507 1.39% 649507
chr22 1142831 2.25% 1142831
chrX 1305739 0.84% 1305738
chrY 14603 0.03% 14603
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57274750 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c12__mean_pred_corrected.bw 434.15 MB dde38b70d9f21c18369784b2fbc38b39
genomic_resource.yaml 1.29 KB 8d9978f3c8e8ec68b51f5501493910e3
statistics/