Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c13/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c13
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c13_mean_counts_contribs float

liu2026Multiomics_Stomach_c13_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c13_mean_counts_contribs [-0.0899, 0.205]
n
122,800,695
mean
0.000176
sd
0.00369

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1228006953.83% 121915606
chr1 11958496 4.80% 11873562
chr2 9533588 3.94% 9463788
chr3 7821055 3.94% 7763055
chr4 5670553 2.98% 5627036
chr5 6240248 3.44% 6194603
chr6 7373007 4.32% 7319600
chr7 6173686 3.87% 6128738
chr8 5265780 3.63% 5227517
chr9 5426999 3.92% 5388237
chr10 5601374 4.19% 5561734
chr11 6384571 4.73% 6338718
chr12 6258210 4.70% 6212894
chr13 2870454 2.51% 2849139
chr14 3971487 3.71% 3943166
chr15 3968434 3.89% 3940036
chr16 4332512 4.80% 4302720
chr17 5837328 7.01% 5796279
chr18 2557080 3.18% 2537167
chr19 4989733 8.51% 4956479
chr20 3283966 5.10% 3260985
chr21 1659599 3.55% 1647168
chr22 2687160 5.29% 2668556
chrX 2809496 1.80% 2789450
chrY 125879 0.22% 124979
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121915606 1 959 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c13__mean_counts_contribs.bw 755.13 MB f7a4829549a249e5f0b96c103138d494
genomic_resource.yaml 1.32 KB e4336f19b5fe77ccb08a0be3bb36e110
statistics/