Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c13/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c13
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c13
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c13_mean_pred_corrected float

liu2026Multiomics_Stomach_c13_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c13_mean_pred_corrected [0.00192, 13.1]
n
63,933,071
mean
0.116
sd
0.213

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 639330711.99% 63933058
chr1 6259402 2.51% 6259401
chr2 4951023 2.04% 4951023
chr3 4054480 2.04% 4054480
chr4 2926657 1.54% 2926657
chr5 3230785 1.78% 3230784
chr6 3841384 2.25% 3841383
chr7 3184349 2.00% 3184348
chr8 2721720 1.88% 2721720
chr9 2822711 2.04% 2822711
chr10 2917262 2.18% 2917258
chr11 3329103 2.46% 3329103
chr12 3260642 2.45% 3260642
chr13 1486252 1.30% 1486250
chr14 2070629 1.93% 2070628
chr15 2053219 2.01% 2053219
chr16 2265529 2.51% 2265529
chr17 3079208 3.70% 3079208
chr18 1314841 1.64% 1314840
chr19 2673411 4.56% 2673411
chr20 1704902 2.65% 1704902
chr21 860424 1.84% 860424
chr22 1395858 2.75% 1395857
chrX 1463184 0.94% 1463184
chrY 66096 0.12% 66096
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63933058 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c13__mean_pred_corrected.bw 484.9 MB b904897a320e19417ba83cfb44f4a2b3
genomic_resource.yaml 1.29 KB 4b519c17327a916cbee4bc4a12c01706
statistics/