Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c14/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c14
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c14_mean_counts_contribs float

liu2026Multiomics_Stomach_c14_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c14_mean_counts_contribs [-0.0268, 0.0832]
n
93,206,424
mean
6.06e-05
sd
0.00266

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 932064242.90% 92300402
chr1 9099576 3.66% 9010788
chr2 7250609 2.99% 7179429
chr3 5720878 2.89% 5663921
chr4 4233979 2.23% 4189476
chr5 4794329 2.64% 4747260
chr6 5487344 3.21% 5434371
chr7 4773537 3.00% 4726134
chr8 3986575 2.75% 3947526
chr9 3994992 2.89% 3956795
chr10 4557210 3.41% 4512184
chr11 5158014 3.82% 5108504
chr12 4719093 3.54% 4673194
chr13 2121233 1.85% 2100350
chr14 2934422 2.74% 2905950
chr15 3041054 2.98% 3010804
chr16 3283322 3.63% 3252785
chr17 4535858 5.45% 4493621
chr18 1722555 2.14% 1704888
chr19 4274278 7.29% 4235783
chr20 2444630 3.79% 2421462
chr21 959665 2.05% 950553
chr22 1835837 3.61% 1818884
chrX 2239126 1.43% 2217792
chrY 38308 0.07% 37948
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92300402 1 978 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c14__mean_counts_contribs.bw 572.14 MB 5141b9ce4031ae75e52e9b5ffe20f3af
genomic_resource.yaml 1.32 KB 531edfc8ff350575e6f3106370846f88
statistics/