Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c14/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c14
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c14
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c14_mean_pred_corrected float

liu2026Multiomics_Stomach_c14_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c14_mean_pred_corrected [0.00135, 6.56]
n
48,158,770
mean
0.077
sd
0.121

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 481587701.50% 48158753
chr1 4715371 1.89% 4715368
chr2 3733028 1.54% 3733028
chr3 2944039 1.48% 2944038
chr4 2178884 1.15% 2178884
chr5 2468433 1.36% 2468432
chr6 2851445 1.67% 2851444
chr7 2458437 1.54% 2458437
chr8 2044502 1.41% 2044502
chr9 2063169 1.49% 2063169
chr10 2344906 1.75% 2344904
chr11 2672558 1.98% 2672558
chr12 2436222 1.83% 2436218
chr13 1085600 0.95% 1085600
chr14 1515162 1.42% 1515162
chr15 1564487 1.53% 1564487
chr16 1697273 1.88% 1697273
chr17 2356849 2.83% 2356846
chr18 880723 1.10% 880723
chr19 2266569 3.87% 2266569
chr20 1261656 1.96% 1261656
chr21 495658 1.06% 495657
chr22 941251 1.85% 941250
chrX 1162967 0.75% 1162967
chrY 19581 0.03% 19581
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48158753 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c14__mean_pred_corrected.bw 364.98 MB fdae1725ecb8e098828c794f9570acb9
genomic_resource.yaml 1.29 KB 3ad2fd989f8abf02ae3b99a792abead9
statistics/