Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c15/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c15
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c15_mean_counts_contribs float

liu2026Multiomics_Stomach_c15_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c15_mean_counts_contribs [-0.0561, 0.239]
n
146,754,001
mean
0.000247
sd
0.00366

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1467540014.57% 145705091
chr1 14034621 5.64% 13935597
chr2 11511328 4.75% 11428245
chr3 9791750 4.94% 9720055
chr4 6871179 3.61% 6819772
chr5 7426998 4.09% 7373715
chr6 9122304 5.34% 9056746
chr7 7729944 4.85% 7674133
chr8 6574789 4.53% 6527556
chr9 6545201 4.73% 6498075
chr10 6877700 5.14% 6827934
chr11 7719644 5.71% 7665647
chr12 7128583 5.35% 7077414
chr13 3626366 3.17% 3599724
chr14 4714860 4.40% 4681482
chr15 4820873 4.73% 4786685
chr16 5015055 5.55% 4980486
chr17 6615282 7.95% 6569232
chr18 3087338 3.84% 3064496
chr19 5523067 9.42% 5485712
chr20 3853931 5.98% 3827169
chr21 1916789 4.10% 1903098
chr22 2809682 5.53% 2790335
chrX 3233352 2.07% 3209917
chrY 203365 0.36% 201866
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 145705091 1 1007 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c15__mean_counts_contribs.bw 903.13 MB 25b2368b89cd2866e6f731fd723605fc
genomic_resource.yaml 1.32 KB 733b250f26bf1783d234ea2a3f9d886e
statistics/