Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c15/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c15
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c15
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c15_mean_pred_corrected float

liu2026Multiomics_Stomach_c15_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c15_mean_pred_corrected [0.00228, 14.4]
n
76,129,981
mean
0.116
sd
0.204

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 761299812.37% 76129951
chr1 7307994 2.94% 7307987
chr2 5948995 2.46% 5948995
chr3 5056623 2.55% 5056622
chr4 3544171 1.86% 3544169
chr5 3839706 2.12% 3839706
chr6 4731130 2.77% 4731129
chr7 3989910 2.50% 3989908
chr8 3385357 2.33% 3385356
chr9 3398466 2.46% 3398464
chr10 3560546 2.66% 3560545
chr11 4024537 2.98% 4024535
chr12 3696852 2.77% 3696852
chr13 1862093 1.63% 1862093
chr14 2457202 2.30% 2457202
chr15 2489252 2.44% 2489251
chr16 2613411 2.89% 2613410
chr17 3484392 4.19% 3484388
chr18 1578566 1.96% 1578565
chr19 2938925 5.01% 2938923
chr20 2002801 3.11% 2002801
chr21 987907 2.11% 987906
chr22 1457161 2.87% 1457160
chrX 1670395 1.07% 1670395
chrY 103589 0.18% 103589
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76129951 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c15__mean_pred_corrected.bw 577.17 MB 096a3d1f4413853504d5e13c5cc94af6
genomic_resource.yaml 1.29 KB 2ff5f716be557228d8cdbbe9663c1947
statistics/