Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c16/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c16
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c16_mean_counts_contribs float

liu2026Multiomics_Stomach_c16_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c16_mean_counts_contribs [-0.0446, 0.112]
n
91,579,531
mean
0.000103
sd
0.00312

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 915795312.85% 90774779
chr1 9140560 3.67% 9060181
chr2 6776046 2.80% 6716188
chr3 5580757 2.81% 5530574
chr4 3905908 2.05% 3868690
chr5 4534931 2.50% 4494527
chr6 5314422 3.11% 5267122
chr7 4741851 2.98% 4700080
chr8 3811779 2.63% 3778212
chr9 3851887 2.78% 3818718
chr10 4219197 3.15% 4182291
chr11 5053132 3.74% 5008687
chr12 4313115 3.24% 4275470
chr13 2067091 1.81% 2048530
chr14 2917228 2.73% 2891511
chr15 2906317 2.85% 2880536
chr16 3418146 3.78% 3389178
chr17 4750905 5.71% 4710778
chr18 1762883 2.19% 1747214
chr19 4646548 7.93% 4609747
chr20 2605880 4.04% 2583542
chr21 989390 2.12% 979856
chr22 2109505 4.15% 2091655
chrX 2124698 1.36% 2106508
chrY 37355 0.07% 34984
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 90774779 1 2114 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c16__mean_counts_contribs.bw 561.85 MB fef2b11ccbd7bf40749cccce012c6717
genomic_resource.yaml 1.32 KB 55377b2a45e5855bfa372874c246d19d
statistics/