Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c16/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c16
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c16
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c16_mean_pred_corrected float

liu2026Multiomics_Stomach_c16_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c16_mean_pred_corrected [0.00114, 6.32]
n
47,359,311
mean
0.0761
sd
0.122

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 473593111.48% 47358358
chr1 4729515 1.90% 4729512
chr2 3499178 1.44% 3499177
chr3 2881924 1.45% 2881922
chr4 2008572 1.06% 2008572
chr5 2334701 1.29% 2334698
chr6 2755195 1.61% 2755195
chr7 2437467 1.53% 2437467
chr8 1961828 1.35% 1961828
chr9 1991839 1.44% 1991839
chr10 2171915 1.62% 2171914
chr11 2615400 1.94% 2615400
chr12 2234585 1.68% 2234585
chr13 1062000 0.93% 1062000
chr14 1506154 1.41% 1506154
chr15 1499758 1.47% 1499758
chr16 1775091 1.96% 1775091
chr17 2481986 2.98% 2481985
chr18 898954 1.12% 898954
chr19 2461933 4.20% 2461930
chr20 1338089 2.08% 1338089
chr21 511926 1.10% 511926
chr22 1079512 2.12% 1079511
chrX 1101910 0.71% 1101910
chrY 19879 0.03% 18941
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47358358 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c16__mean_pred_corrected.bw 358.94 MB 5be4953ff03bdc4650c05578bcaa16b3
genomic_resource.yaml 1.29 KB 4b0626cfde2d692b48edd9c8ff76f530
statistics/