Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c17/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c17
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c17_mean_counts_contribs float

liu2026Multiomics_Stomach_c17_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c17_mean_counts_contribs [-0.0266, 0.064]
n
73,477,671
mean
1.73e-05
sd
0.00231

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 734776712.29% 72776967
chr1 7399841 2.97% 7329135
chr2 5807480 2.40% 5751834
chr3 4738279 2.39% 4692568
chr4 3233566 1.70% 3200648
chr5 3567108 1.96% 3532686
chr6 4238433 2.48% 4198058
chr7 3512243 2.20% 3478426
chr8 2923149 2.01% 2894907
chr9 3265717 2.36% 3234765
chr10 3562273 2.66% 3528630
chr11 4029492 2.98% 3991873
chr12 3785831 2.84% 3749797
chr13 1633310 1.43% 1617551
chr14 2353722 2.20% 2331489
chr15 2314915 2.27% 2292983
chr16 2726289 3.02% 2700940
chr17 3669505 4.41% 3634881
chr18 1311789 1.63% 1298303
chr19 3445798 5.88% 3414930
chr20 1849841 2.87% 1832375
chr21 820583 1.76% 812557
chr22 1500992 2.95% 1486916
chrX 1751914 1.12% 1735452
chrY 35601 0.06% 35263
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72776967 1 954 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c17__mean_counts_contribs.bw 451.32 MB 30811bca93753f92d5d389f82188122c
genomic_resource.yaml 1.32 KB 4673f718d89e48b524fbdf389ffe14e4
statistics/