Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c17/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c17
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c17
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c17_mean_pred_corrected float

liu2026Multiomics_Stomach_c17_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c17_mean_pred_corrected [0.000334, 2.09]
n
37,188,036
mean
0.0389
sd
0.0534

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 371880361.16% 37188027
chr1 3755298 1.51% 3755297
chr2 2938608 1.21% 2938607
chr3 2393690 1.21% 2393689
chr4 1628512 0.86% 1628510
chr5 1799381 0.99% 1799381
chr6 2156672 1.26% 2156672
chr7 1766989 1.11% 1766989
chr8 1466297 1.01% 1466297
chr9 1649521 1.19% 1649521
chr10 1810660 1.35% 1810660
chr11 2051688 1.52% 2051687
chr12 1917515 1.44% 1917514
chr13 823972 0.72% 823972
chr14 1196631 1.12% 1196631
chr15 1165579 1.14% 1165579
chr16 1374441 1.52% 1374441
chr17 1861564 2.24% 1861564
chr18 656007 0.82% 656007
chr19 1780545 3.04% 1780545
chr20 926429 1.44% 926429
chr21 409775 0.88% 409775
chr22 752356 1.48% 752355
chrX 888129 0.57% 888128
chrY 17777 0.03% 17777
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37188027 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c17__mean_pred_corrected.bw 281.9 MB 8e46354995a179be21c15f82868d13a2
genomic_resource.yaml 1.29 KB 8ad3c9c17dbc162e4d89c3b0f4eb7a44
statistics/