Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c18/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c18
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c18
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c18_mean_pred_corrected float

liu2026Multiomics_Stomach_c18_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c18_mean_pred_corrected [0.00117, 8.77]
n
54,664,814
mean
0.0791
sd
0.141

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 546648141.70% 54664804
chr1 5472242 2.20% 5472241
chr2 4359596 1.80% 4359595
chr3 3433000 1.73% 3432999
chr4 2442146 1.28% 2442146
chr5 2659073 1.46% 2659073
chr6 3177089 1.86% 3177089
chr7 2691140 1.69% 2691140
chr8 2313954 1.59% 2313954
chr9 2411276 1.74% 2411275
chr10 2576974 1.93% 2576973
chr11 3064846 2.27% 3064845
chr12 2626612 1.97% 2626612
chr13 1191456 1.04% 1191456
chr14 1785958 1.67% 1785958
chr15 1775776 1.74% 1775775
chr16 1951447 2.16% 1951447
chr17 2724229 3.27% 2724228
chr18 1041740 1.30% 1041739
chr19 2427400 4.14% 2427400
chr20 1446714 2.24% 1446714
chr21 606655 1.30% 606655
chr22 1225115 2.41% 1225115
chrX 1228742 0.79% 1228741
chrY 31634 0.06% 31634
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54664804 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c18__mean_pred_corrected.bw 414.45 MB 1bfe913a3f072f16e6bdeba39dcad5a9
genomic_resource.yaml 1.29 KB 10e1c5db1c1233adcbf0a9b84de7747d
statistics/