Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c19/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c19
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c19
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c19_mean_pred_corrected float

liu2026Multiomics_Stomach_c19_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c19_mean_pred_corrected [0.001, 3.47]
n
28,215,338
mean
0.0351
sd
0.0488

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 282153380.88% 28215325
chr1 2881754 1.16% 2881753
chr2 2091840 0.86% 2091839
chr3 1654832 0.83% 1654830
chr4 1023061 0.54% 1023060
chr5 1301510 0.72% 1301509
chr6 1716124 1.00% 1716124
chr7 1348081 0.85% 1348080
chr8 1082625 0.75% 1082625
chr9 1184189 0.86% 1184189
chr10 1301428 0.97% 1301427
chr11 1494417 1.11% 1494417
chr12 1465674 1.10% 1465673
chr13 553959 0.48% 553959
chr14 922589 0.86% 922588
chr15 892495 0.88% 892494
chr16 1107299 1.23% 1107299
chr17 1627034 1.95% 1627034
chr18 471739 0.59% 471739
chr19 1742454 2.97% 1742454
chr20 763727 1.19% 763726
chr21 292176 0.63% 292176
chr22 665051 1.31% 665050
chrX 620229 0.40% 620229
chrY 11051 0.02% 11051
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28215325 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c19__mean_pred_corrected.bw 214.44 MB 98ffd6d91319020d757d0306ee72fcf5
genomic_resource.yaml 1.29 KB d3adbe065e84353bd34ff8ce27b42ffd
statistics/