Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c2/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c2
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c2
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c2_mean_pred_corrected float

liu2026Multiomics_Stomach_c2_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c2_mean_pred_corrected [0.000171, 60.7]
n
97,845,884
mean
0.38
sd
0.873

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 978458843.05% 97844412
chr1 9479579 3.81% 9479576
chr2 7728460 3.19% 7728454
chr3 6224763 3.14% 6224756
chr4 4505096 2.37% 4505092
chr5 5088069 2.80% 5088068
chr6 5760766 3.37% 5760764
chr7 4981103 3.13% 4981103
chr8 4171349 2.87% 4171349
chr9 4310473 3.11% 4310469
chr10 4798986 3.59% 4798985
chr11 5271494 3.90% 5271491
chr12 4788715 3.59% 4788712
chr13 2409381 2.11% 2409381
chr14 3170149 2.96% 3170148
chr15 3257685 3.19% 3257683
chr16 3435328 3.80% 3435327
chr17 4578960 5.50% 4578957
chr18 1923659 2.39% 1923659
chr19 3831750 6.54% 3831749
chr20 2696257 4.18% 2696256
chr21 1165223 2.49% 1165221
chr22 1988138 3.91% 1988137
chrX 2248298 1.44% 2248297
chrY 32203 0.06% 30778
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97844412 1 1399 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c2__mean_pred_corrected.bw 739.95 MB 442694f0494e27279f7fb550e4683739
genomic_resource.yaml 1.28 KB d1f507e7ca0238a63cc2f45c516af649
statistics/