Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c20/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c20
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c20
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c20_mean_pred_corrected float

liu2026Multiomics_Stomach_c20_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c20_mean_pred_corrected [0.00114, 2.58]
n
38,480,750
mean
0.0388
sd
0.0593

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 384807501.20% 38480736
chr1 3675345 1.48% 3675345
chr2 3062523 1.26% 3062522
chr3 2493631 1.26% 2493630
chr4 1786161 0.94% 1786160
chr5 2008978 1.11% 2008977
chr6 2292328 1.34% 2292327
chr7 2002524 1.26% 2002524
chr8 1635917 1.13% 1635916
chr9 1646796 1.19% 1646796
chr10 1727182 1.29% 1727181
chr11 2082889 1.54% 2082888
chr12 1915866 1.44% 1915865
chr13 941207 0.82% 941206
chr14 1220981 1.14% 1220981
chr15 1200765 1.18% 1200763
chr16 1362869 1.51% 1362869
chr17 1802074 2.16% 1802074
chr18 752882 0.94% 752882
chr19 1804717 3.08% 1804716
chr20 1012706 1.57% 1012706
chr21 431674 0.92% 431674
chr22 725862 1.43% 725862
chrX 879936 0.56% 879935
chrY 14937 0.03% 14937
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38480736 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c20__mean_pred_corrected.bw 292.13 MB f2665c52812a7572ffa0849ee28115e0
genomic_resource.yaml 1.29 KB eacad42874c7c8b5dbce94772e06cf0a
statistics/