Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c21/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c21
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c21
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c21_mean_pred_corrected float

liu2026Multiomics_Stomach_c21_mean_pred_corrected
bias-corrected accessibility predicted by ChromBPNet
 HISTOGRAM FOR liu2026Multiomics_Stomach_c21_mean_pred_corrected [0.00056, 1.26]
n
19,313,335
mean
0.0244
sd
0.0287

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 193133350.60% 19313324
chr1 2017742 0.81% 2017741
chr2 1403187 0.58% 1403185
chr3 1136333 0.57% 1136333
chr4 746693 0.39% 746691
chr5 878162 0.48% 878162
chr6 1051541 0.62% 1051540
chr7 925311 0.58% 925310
chr8 711305 0.49% 711305
chr9 855933 0.62% 855932
chr10 817264 0.61% 817263
chr11 1072238 0.79% 1072238
chr12 992746 0.74% 992746
chr13 386394 0.34% 386394
chr14 584265 0.55% 584265
chr15 627704 0.62% 627704
chr16 815970 0.90% 815970
chr17 1089402 1.31% 1089401
chr18 324731 0.40% 324731
chr19 1272642 2.17% 1272641
chr20 521086 0.81% 521086
chr21 198077 0.42% 198077
chr22 441695 0.87% 441695
chrX 442914 0.28% 442914
432 contigs with no values (178243688 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19313324 1 2 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c21__mean_pred_corrected.bw 146.84 MB a774037880b011aad9439a47f0c810cf
genomic_resource.yaml 1.29 KB 7c0d839847cd10fe4459da8752147b57
statistics/