Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c3/mean_pred_correctedcontent_copy
Type position_score
Version 0
Summary mean_pred_corrected for Stomach for cell cluster c3
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c3
  • data_types: atac_signal
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: phred_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c3_mean_pred_corrected float

liu2026Multiomics_Stomach_c3_mean_pred_corrected

bias-corrected accessibility predicted by ChromBPNet
HISTOGRAM FOR liu2026Multiomics_Stomach_c3_mean_pred_corrected [0.000648, 48.4]
n
93,793,139
mean
0.314
sd
0.658

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 937931392.92% 93792150
chr1 9087281 3.65% 9087276
chr2 7515417 3.10% 7515412
chr3 5999462 3.03% 5999458
chr4 4497948 2.36% 4497945
chr5 4846454 2.67% 4846451
chr6 5437853 3.18% 5437850
chr7 4814683 3.02% 4814680
chr8 3959367 2.73% 3959366
chr9 4087957 2.95% 4087954
chr10 4317949 3.23% 4317947
chr11 5099641 3.78% 5099634
chr12 4545641 3.41% 4545641
chr13 2361233 2.06% 2361233
chr14 3108164 2.90% 3108164
chr15 3031111 2.97% 3031110
chr16 3236609 3.58% 3236606
chr17 4350442 5.23% 4350441
chr18 1923231 2.39% 1923229
chr19 3770799 6.43% 3770795
chr20 2448553 3.80% 2448552
chr21 1056437 2.26% 1056437
chr22 1885613 3.71% 1885612
chrX 2376526 1.52% 2376523
chrY 34768 0.06% 33834
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93792150 1 911 1 1
global segment-length histogram

Files

Filename Size md5
Stomach_c3__mean_pred_corrected.bw 709.58 MB 6f2b860277b84c0d7ca1af8365a362be
genomic_resource.yaml 1.28 KB 836f573c7217ea1b22ee4cf2d96fa4d0
statistics/