Resource
| Id | summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c4/mean_counts_contribs |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | mean_counts_contribs for Stomach for cell cluster c4 |
| Description |
Downloaded from: https://zenodo.org/records/15066651. Description of the data and download instructions can be found https://github.com/GreenleafLab/HDMA/blob/main/DATA.md |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| liu2026Multiomics_Stomach_c4_mean_counts_contribs | float |
liu2026Multiomics_Stomach_c4_mean_counts_contribs |
base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
|
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[-0.0955, 0.366] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 197110036 | 6.14% | 196050431 |
| chr1 | 18862084 | 7.58% | 18761420 |
| chr2 | 16123548 | 6.66% | 16036302 |
| chr3 | 12994321 | 6.55% | 12923879 |
| chr4 | 9583010 | 5.04% | 9528653 |
| chr5 | 9977550 | 5.50% | 9922989 |
| chr6 | 12306572 | 7.21% | 12239687 |
| chr7 | 9989049 | 6.27% | 9935153 |
| chr8 | 8535615 | 5.88% | 8489222 |
| chr9 | 8587416 | 6.21% | 8541552 |
| chr10 | 9017792 | 6.74% | 8969192 |
| chr11 | 10426531 | 7.72% | 10371672 |
| chr12 | 9734840 | 7.30% | 9681987 |
| chr13 | 4914457 | 4.30% | 4887380 |
| chr14 | 6256683 | 5.84% | 6223411 |
| chr15 | 6558141 | 6.43% | 6523271 |
| chr16 | 6437104 | 7.13% | 6404172 |
| chr17 | 8734296 | 10.49% | 8688727 |
| chr18 | 4316197 | 5.37% | 4291390 |
| chr19 | 7128834 | 12.16% | 7093434 |
| chr20 | 5300827 | 8.23% | 5273131 |
| chr21 | 2639667 | 5.65% | 2625351 |
| chr22 | 3917658 | 7.71% | 3897777 |
| chrX | 4475216 | 2.87% | 4450494 |
| chrY | 292628 | 0.51% | 290185 |
| 431 contigs with no values (121016273 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 196050431 | 1 | 923 | 1.01 | 1 |
Files
| Filename | Size | md5 |
|---|---|---|
| Stomach_c4__mean_counts_contribs.bw | 1.19 GB | 862bb3290df7bcdbd0b901ede249e771 |
| genomic_resource.yaml | 1.32 KB | 5ca3082218ec999c149dab1810d383c4 |
| statistics/ |
