Resource

Id summary/liu2026Multiomics/pseudobulk_accessibility/Stomach/c4/mean_counts_contribscontent_copy
Type position_score
Version 0
Summary mean_counts_contribs for Stomach for cell cluster c4
Description
Labels
  • assay: SHARE-seq
  • cluster: Stomach_c4
  • data_types: atac_contribution
  • dataset: liu2026Multiomics
  • modalities: ATAC
  • organ: Stomach
  • processing_level: contribution_scores
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: unknown

Scores (1)

ID Type Default annotation Description Histogram Range Summary
liu2026Multiomics_Stomach_c4_mean_counts_contribs float

liu2026Multiomics_Stomach_c4_mean_counts_contribs

base-resolution contribution scores for the counts head of ChromBPNet as computed by DeepLIFT
HISTOGRAM FOR liu2026Multiomics_Stomach_c4_mean_counts_contribs [-0.0955, 0.366]
n
197,110,036
mean
0.000414
sd
0.00479

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1971100366.14% 196050431
chr1 18862084 7.58% 18761420
chr2 16123548 6.66% 16036302
chr3 12994321 6.55% 12923879
chr4 9583010 5.04% 9528653
chr5 9977550 5.50% 9922989
chr6 12306572 7.21% 12239687
chr7 9989049 6.27% 9935153
chr8 8535615 5.88% 8489222
chr9 8587416 6.21% 8541552
chr10 9017792 6.74% 8969192
chr11 10426531 7.72% 10371672
chr12 9734840 7.30% 9681987
chr13 4914457 4.30% 4887380
chr14 6256683 5.84% 6223411
chr15 6558141 6.43% 6523271
chr16 6437104 7.13% 6404172
chr17 8734296 10.49% 8688727
chr18 4316197 5.37% 4291390
chr19 7128834 12.16% 7093434
chr20 5300827 8.23% 5273131
chr21 2639667 5.65% 2625351
chr22 3917658 7.71% 3897777
chrX 4475216 2.87% 4450494
chrY 292628 0.51% 290185
431 contigs with no values (121016273 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 196050431 1 923 1.01 1
global segment-length histogram

Files

Filename Size md5
Stomach_c4__mean_counts_contribs.bw 1.19 GB 862bb3290df7bcdbd0b901ede249e771
genomic_resource.yaml 1.32 KB 5ca3082218ec999c149dab1810d383c4
statistics/